Graduated Students


PhD Students

Thesis/Dissertation Title

Evaluating Experimental Information Management in Biomedical Research: A Case-Study Approach

Last Known Position

Associate Professor and Division Head, Health Informatics, UC Davis


Alan Au
2013

Thesis/Dissertation Title

What Difference Does a Form Make: Redesign and Evaluation of a Form for Documenting In-Hospital Cardiac Arrest

Last Known Position

Senior Fellow, University of Washington


Thesis/Dissertation Title

Temporal Data Mining in Electronic Medical Records from Patients with Acute Coronary Syndrome

Last Known Position

Postdoctoral Fellow, University of Pennslyvania


Thesis/Dissertation Title

Temporal Data Mining in Electronic Medical Records from Patients with Acute Coronary Syndrome

Last Known Position

Senior Analyst, Oracle


Thesis/Dissertation Title

An Evidential Knowledge Representation for Drug-mechanisms and its Application to Drug Safety

Last Known Position

Associate Professor, Biomedical Informatics, University of Pittsburgh



Thesis/Dissertation Title

Automated Learning of Protein Involvement in Pathogenesis Using Integrated Queries

Last Known Position

Principal Data Scientist, Ayasdi Inc.



Thesis/Dissertation Title

Secondary Use of Clinical Data: Barriers, Facilitators and a Proposed Solution

Last Known Position

Assistant Professor, Department of Internal Medicine, Pontificia Universidad Católica de Chile; Affiliate Assistant Professor UW Department of Biomedical Informatics and Medical Education




Thesis/Dissertation Title

Evaluation of a Computer-Based System using Cell Phones for HIV positive people in Peru

Last Known Position

Assistant Professor, Department of Internal Medicine, Pontificia Universidad Católica de Chile; Affiliate Assistant Professor UW Department of Biomedical Informatics and Medical Education


Thesis/Dissertation Title

Automated Analysis and Surveillance for STI / HIV Online Behavior

Last Known Position

Assistant Professor, Department of Health Administration, Virginia Commonwealth University


Thesis/Dissertation Title

Approaches and Strategy for Cancer Research and Surveillance Data: Integration, Information Pipeline, Data Models, and Informatics Opportunities

Last Known Position

Chief of the Surveillance Informatics Branch, Surveillance Research Program (SRP) at the National Cancer Institute, Division of Cancer Control and Population Science


Thesis/Dissertation Title

The Synthetic Biology Open Language: A Data Exchange Standard for Biological Engineering

Last Known Position

Scientist, Arzeda Corporation; Chief Science Officer, HiveBio Community Lab



Thesis/Dissertation Title

Ontology Based Data Integration of Open Source Electronic Medical Record and Data Capture Systems

Last Known Position

Software Developer, University of Louisiana at Lafayette and the Louisiana Department of Health and Hospitals


Thesis/Dissertation Title

Understanding and Facilitating Patient Expertise Sharing

Last Known Position

Assistant Investigator Group Health Research Institute



Thesis/Dissertation Title

Information Needs and the Characteristics of Population Data Sources: An Immunization Information System Case Study

Last Known Position

Clinical Assistant Professor, Biobehavioral Nursing and Health Systems, University of Washington; Research Coordinator, Northwest Center for Public Health Practice



Thesis/Dissertation Title

Bayesian Networks from Ontological Formalisms in Radiation Oncology

Last Known Position

Assistant Professor, Department of Radiation Oncology, University of Washington





Thesis/Dissertation Title

Supporting Multi-institutional, Interdisciplinary Biomedical Collaboration (MIBC): A Biomedical Informatics Approach

Last Known Position

Biomedical Informatics Consultant, Institute of Translational Health Sciences (ITHS), University of Washington



Thesis/Dissertation Title

A Model Driven Laboratory Information Management System

Last Known Position

Software Developer, Practice Fusion


Thesis/Dissertation Title

A Cognitive Work Analysis of Physician Order Entry in Pediatric Inpatient Medicine Teams

Last Known Position

Visiting Fellow, George Institute for Global Health, Peking University Health Science Center


Thesis/Dissertation Title

A Shape-based Image Retrieval System for Assisting Intervention Planning

Last Known Position

Senior Analyst, Beghou Consulting



Thesis/Dissertation Title

Modeling Uncertainty in Data Integration for Improving Protein Function Assignment

Last Known Position

Computational Scientist, Nodality


Thesis/Dissertation Title

Modular, Semantics-based Composition of Biosimulation Models

Last Known Position

Computational Biologist, Center for Infectious Disease Research (CIDR()


Thesis/Dissertation Title

Reproducibility in Human Cognitive Neuroimaging: A Community-Driven Data Sharing Framework for Provenance Information Integration and Interoperability

Last Known Position

Postdoctoral Fellow,Psychiatry and Behavioral Sciences, Stanford University School of Medicine



Thesis/Dissertation Title

Enhancing Health Information Gathering Experience in Online Health Communities

Last Known Position

Postdoctoral Research Fellow, Biomedical Informatics, University of Utah


Thesis/Dissertation Title

Designing for Use and Acceptance of Tracking Tools in Healthcare

Last Known Position

User Experience Researcher, GoDaddy



Thesis/Dissertation Title

Notifiable Conditions Information Systems in Local Public Health Practice: Applied Informatics Research

Last Known Position

Research Scientist, RTI International; Adjunct Professor, Emory University


Thesis/Dissertation Title

A Proof of Concept System for Automated Cervical Cancer Screening in Peru

Last Known Position

Research Assistant, Bioinformatics, Universidad Peruana Cayetano Heredia


Thesis/Dissertation Title

Characterizing Information Needs for Public Health Continuity of Operations: A Scenario-Based Design Approach

Last Known Position

Assistant Professor, University of Colorado College of Nursing



Thesis/Dissertation Title

Development and Evaluation of a Web-based Electronic Medical Record System Without Borders

Last Known Position

Medical Record System Without Borders; 2012 Co-founder and Executive Director, ConstaTec Solutions, LLC


Thesis/Dissertation Title

Patient-Centered Development and Evaluation of a Mobile Wound Tracking Tool

Last Known Position

Medical Student, University of Washington


Thesis/Dissertation Title

Determining the Feasibility and Value of Federated Data Integration Combining Logical and Probabilistic Inference for SNP Annotation

Last Known Position

Faculty Research Associate, University of Maryland School of Nursing


Thesis/Dissertation Title

Mining Mountains of Data: Organizing All Atom Molecular Dynamics Protein Simulation Data into SQL

Last Known Position

Subject Matter Expert, Cognitive Medical Systems, Inc.


Thesis/Dissertation Title

A Rule-Based Strategy for Accurately Describing Gene Content Similarities and Differences Across Multiple Genomes

Last Known Position

Assistant Director, Commercial Development Group, Intellectual Ventures




Thesis/Dissertation Title

Errors in the Clinical Laboratory: A Novel Approach to Autoverification

Last Known Position

Informatics Manager, Northwest Lipid Metabolism and Diabetes Research Laboratories



Thesis/Dissertation Title

Information and Communication Technologies in Patient-Centered Healthcare Redesign: Qualitative Studies of Provider Experience

Last Known Position

Patient Portal Product Manager, NextGen Healthcare



Thesis/Dissertation Title

Supporting Collaborative Clinical Trial Protocol Writing through Annotation Design

Last Known Position

Associate Professor, Biomedical Informatics, Columbia University


Thesis/Dissertation Title

Information extraction from clinical and radiology notes for liver cancer staging

Last Known Position

Postdoctoral Scholar Stanford University


Visiting Students

Clinical Informatics Fellows

MS Students





Thesis/Dissertation Title

Comparative Genomics: Database Management and Analysis System for NGS Data

Last Known Position

Analytical Software Engineer, Intel Corporation



Thesis/Dissertation Title

A Rapid Prototyping Solution for Annotating Experimental Results Using the BioMediator System

Last Known Position

Director of Product Management, Verve Wireless


Thesis/Dissertation Title

CELO: A System for Efficiently Building Informatics Solutions to Manage Biomedical Research Data

Last Known Position

Biomedical Informatics Consultant, Institute of Translational Health Sciences (ITHS), University of Washington



Thesis/Dissertation Title

Clinical Effectiveness and Patient Satisfaction of Telemedicine in Pediatric Rheumatology

Last Known Position

Assistant Professor, Pediatric Rheumatology, University Of Utah School of Medicine and Primary Children’s Medical Center


Thesis/Dissertation Title

Automating Gene Prioritization for Wet Lab Research

Last Known Position

Informatics Research Associate, Oregon Health & Science University



Thesis/Dissertation Title

Design Recommendations for Pharmacogenomics Clinical Decision Support Systems

Last Known Position

PhD student, Biomedical and Health Informatics, University of Washington




Last Known Position

PhD student, Biomedical and Health Informatics, University of Washington


Thesis/Dissertation Title

Performance Evaluation of a Natural Language Processing Tool to Extract Infectious Disease Problems

Last Known Position

Applied Public Health Informatics Fellow, New York City Department of Health and Mental Hygiene





Thesis/Dissertation Title

Changes in Clinical Documentation during an EMR Implementation

Last Known Position

Integration Architect, Cerner Corporation


Thesis/Dissertation Title

Physician Perspectives of Pharmacogenomic Drug Alerts

Last Known Position

Medical Student, University of Washington


Thesis/Dissertation Title

A Computer Assisted Coding Tool of the International Classification of Diseases - Version 10 for Mortality Data

Last Known Position

Affiliate Assistant Professor, Global Health, University of Washington; Head of Statistics, Informatics, Data Management and Systems (UIDES) Unit, Partners in Health Peru



Thesis/Dissertation Title

Applying a Service-Oriented Architecture Model to TB Diagnosis using MODS Pattern Recognition Algorithm

Last Known Position

Research Assistant, Bioinformatics, Universidad Peruana Cayetano Heredia


Thesis/Dissertation Title

Clinical Phenotyping in the Prediction of Acute Kidney Injury

Last Known Position

University of Wisconsin








Thesis/Dissertation Title

The Central Dogma of Molecular Biology: Towards an Ontological Characterization of Cellular Signaling

Last Known Position

Assistant Medical Director, GE Healthcare


Visiting Students

Clinical Informatics Fellows

Postgraduate Trainees



Last Known Position

AssistantProfessor in Nursing, UW Tacoma







Jina Huh
2013







Last Known Position

rofessor, Biobehavioral Nursing and Health Systems Joint Professor, BIME Joint Professor, Global Health Adjunct Professor, Health Services



Last Known Position

Asst Professor in Human-Centered Computing, IUPUI















Visiting Students

Clinical Informatics Fellows